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1878-0326 22 2016 Jan 25 Forensic science international. Genetics Forensic Sci Int Genet The Global AIMs Nano set: A 31-plex SNaPshot assay of ancestry-informative SNPs. 81-88 S1872-4973(16)30015-1 10.1016/j.fsigen.2016.01.015 A 31-plex SNaPshot assay, named 'Global AIMs Nano', has been developed by reassembling the most differentiated markers of the EUROFORGEN Global AIM-SNP set. The SNPs include three tri-allelic loci and were selected with the goal of maintaining a balanced differentiation of: Africans, Europeans, East Asians, Oceanians and Native Americans. The Global AIMs Nano SNP set provides higher divergence between each of the five continental population groups than previous small-scale AIM sets developed for forensic ancestry analysis with SNaPshot. Both of these characteristics minimise potential bias when estimating co-ancestry proportions in individuals with admixed ancestry; more likely to be observed when using markers disproportionately informative for only certain population group comparisons. The optimised multiplex is designed to be easily implemented using standard capillary electrophoresis regimes and has been used to successfully genotype challenging forensic samples from highly degraded material with low level DNA. The ancestry predictive performance of the Global AIMs Nano set has been evaluated by the analysis of samples previously characterised with larger AIM sets. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved. de la Puente M M Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain. Santos C C Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain. Fondevila M M Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain. Manzo L L Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain. EUROFORGEN-NoE Consortium Carracedo Á Á Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain; Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia. Lareu M V MV Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain. Phillips C C Forensic Genetics Unit, Institute of Forensic Sciences, University of Santiago de Compostela, Spain. Electronic address: c.phillips@mac.com. ENG JOURNAL ARTICLE 2016 1 25
Forensic Sci Int Genet 101317016 1872-4973 AIMs Biogeographical ancestry Population-specific Divergence SNPs SNaPshot
2015 10 7 2016 1 20 2016 1 21 2016 2 17 6 0 2016 2 18 6 0 2016 2 18 6 0 aheadofprint S1872-4973(16)30015-1 10.1016/j.fsigen.2016.01.015 26881328